Variant report

Variant	rs11252156
Chromosome Location	chr10:3927115-3927116
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:3826559..3829897-chr10:3926738..3930389,8	K562	blood:
2	chr10:3825547..3831320-chr10:3926976..3934431,16	K562	blood:
3	chr10:3824749..3830831-chr10:3926103..3931668,12	MCF-7	breast:
4	chr10:3824472..3830476-chr10:3927043..3934496,15	MCF-7	breast:
5	chr10:3921845..3924226-chr10:3926342..3927991,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10795119	1.00[EUR][1000 genomes]
rs11252200	1.00[EUR][1000 genomes]
rs17131879	1.00[EUR][1000 genomes]
rs2397396	1.00[EUR][1000 genomes]
rs2478063	1.00[EUR][1000 genomes]
rs2765652	1.00[EUR][1000 genomes]
rs2765655	1.00[EUR][1000 genomes]
rs2894883	1.00[EUR][1000 genomes]
rs4480434	1.00[EUR][1000 genomes]
rs4634983	1.00[EUR][1000 genomes]
rs4881268	1.00[EUR][1000 genomes]
rs4881270	1.00[EUR][1000 genomes]
rs4881273	1.00[EUR][1000 genomes]
rs58922034	1.00[EUR][1000 genomes]
rs60224757	1.00[EUR][1000 genomes]
rs60653339	1.00[EUR][1000 genomes]
rs6601795	1.00[EUR][1000 genomes]
rs7475801	1.00[EUR][1000 genomes]
rs7905449	1.00[EUR][1000 genomes]
rs7916530	1.00[EUR][1000 genomes]
rs943016	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:3901000-3927800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:3909800-3927600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:3915400-3928600	Weak transcription	Fetal Lung	lung
4	chr10:3917600-3929200	Weak transcription	Aorta	Aorta
5	chr10:3917800-3928800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:3919800-3929000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr10:3920000-3931800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr10:3920200-3927600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:3920200-3927600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr10:3920200-3927800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr10:3920200-3927800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr10:3920200-3927800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr10:3920200-3927800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:3920200-3929600	Weak transcription	Spleen	Spleen
15	chr10:3920200-3932200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr10:3922400-3929200	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr10:3922600-3927600	Weak transcription	HepG2	liver
18	chr10:3922600-3930000	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr10:3924200-3929800	Weak transcription	Esophagus	oesophagus
20	chr10:3924200-3936400	Weak transcription	Lung	lung
21	chr10:3924400-3927600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:3924400-3927600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr10:3924400-3927600	Weak transcription	Pancreas	Pancrea
24	chr10:3924600-3928200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr10:3925400-3928400	Weak transcription	Placenta	Placenta
26	chr10:3926600-3928600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr10:3926800-3927200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr10:3926800-3927800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:3926800-3928600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr10:3926800-3929600	Weak transcription	Right Ventricle	heart
31	chr10:3927000-3928000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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