Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10795119	1.00[EUR][1000 genomes]
rs10795120	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11252156	1.00[EUR][1000 genomes]
rs11252200	1.00[EUR][1000 genomes]
rs17131879	1.00[EUR][1000 genomes]
rs1886945	1.00[EUR][1000 genomes]
rs2013181	1.00[EUR][1000 genomes]
rs2397396	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2478063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2765652	1.00[EUR][1000 genomes]
rs2765655	1.00[EUR][1000 genomes]
rs2765661	1.00[EUR][1000 genomes]
rs2894883	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4634983	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4881268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4881270	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4881273	0.80[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs58922034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60224757	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60653339	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6601795	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7475801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7905449	1.00[EUR][1000 genomes]
rs7916530	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs943016	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv5609	chr10:4002849-4040114	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4020200-4032600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:4022200-4036400	Weak transcription	Right Atrium	heart
3	chr10:4028200-4033800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:4028800-4032000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:4029600-4034000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:4030200-4037600	Weak transcription	HUVEC	blood vessel
7	chr10:4030600-4036200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:4030600-4037400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:4031200-4032000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr10:4031200-4037000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:4031600-4032000	Enhancers	Primary B cells from peripheral blood	blood
12	chr10:4031600-4032000	Enhancers	Fetal Thymus	thymus

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