Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:3827101..3828753-chr10:4060844..4063751,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10795119	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10795120	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11252156	1.00[EUR][1000 genomes]
rs11252200	1.00[EUR][1000 genomes]
rs11595217	1.00[CHB][hapmap]
rs12765804	1.00[CHB][hapmap]
rs17131879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1886945	1.00[EUR][1000 genomes]
rs2013181	1.00[EUR][1000 genomes]
rs2397396	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2478063	1.00[EUR][1000 genomes]
rs2645213	0.84[AFR][1000 genomes]
rs2765652	1.00[EUR][1000 genomes]
rs2765655	1.00[EUR][1000 genomes]
rs2765661	1.00[EUR][1000 genomes]
rs2894883	1.00[EUR][1000 genomes]
rs4480434	1.00[EUR][1000 genomes]
rs4634983	1.00[EUR][1000 genomes]
rs4881268	1.00[EUR][1000 genomes]
rs4881270	1.00[EUR][1000 genomes]
rs4881273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58922034	1.00[EUR][1000 genomes]
rs60224757	1.00[EUR][1000 genomes]
rs60653339	1.00[EUR][1000 genomes]
rs6601795	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7475801	1.00[EUR][1000 genomes]
rs7904986	1.00[CHB][hapmap]
rs7906433	1.00[CHB][hapmap]
rs7916530	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs943016	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4056200-4066800	Weak transcription	Adipose Nuclei	Adipose
2	chr10:4056600-4068800	Weak transcription	NHDF-Ad	bronchial
3	chr10:4057200-4063800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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