Variant report
| Variant | rs943016 |
|---|---|
| Chromosome Location | chr10:4039846-4039847 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:4033984..4038584-chr10:4038783..4042645,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10795119 | 1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10795120 | 0.84[ASN][1000 genomes] |
| rs11252156 | 1.00[EUR][1000 genomes] |
| rs11252200 | 1.00[EUR][1000 genomes] |
| rs17131879 | 1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1886945 | 1.00[EUR][1000 genomes] |
| rs2013181 | 1.00[EUR][1000 genomes] |
| rs2397396 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2478063 | 1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2765652 | 1.00[EUR][1000 genomes] |
| rs2765655 | 1.00[EUR][1000 genomes] |
| rs2765661 | 1.00[EUR][1000 genomes] |
| rs2894883 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4480434 | 1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4634983 | 1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4881268 | 1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4881270 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4881273 | 1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs58922034 | 1.00[EUR][1000 genomes] |
| rs60224757 | 1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs60653339 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6601795 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7475801 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7905449 | 1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7916530 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1051297 | chr10:3908706-4277678 | Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv894784 | chr10:3985194-4051081 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers | Chromatin interactive regionlncRNAmiRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv5609 | chr10:4002849-4040114 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer | Chromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv831772 | chr10:4039292-4212218 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:4036800-4043200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 2 | chr10:4038600-4042000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
