Variant report

Variant	rs1125360
Chromosome Location	chr15:58263658-58263659
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58256067..58257569-chr15:58262766..58264756,2	K562	blood:
2	chr15:58251581..58253908-chr15:58262136..58263877,2	K562	blood:
3	chr15:58258528..58260407-chr15:58261970..58264281,2	K562	blood:
4	chr15:58260833..58263956-chr15:58356414..58359716,3	K562	blood:
5	chr15:58261234..58263951-chr15:58334442..58336096,2	K562	blood:

Variant related genes	Relation type
ENSG00000259285	Chromatin interaction
ENSG00000128918	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10518951	0.83[EUR][1000 genomes]
rs1078777	0.85[EUR][1000 genomes]
rs12591551	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12591715	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12591835	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12592773	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12592810	0.87[ASN][1000 genomes]
rs12593050	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12593414	0.82[EUR][1000 genomes]
rs12594689	0.85[EUR][1000 genomes]
rs12595264	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1372367	0.85[EUR][1000 genomes]
rs16939707	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16939727	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16939733	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16953355	0.81[EUR][1000 genomes]
rs16977858	0.86[EUR][1000 genomes]
rs16977861	0.83[EUR][1000 genomes]
rs16977865	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16977883	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1837850	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1874157	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1874158	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34165083	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35016264	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35056852	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35385267	0.85[EUR][1000 genomes]
rs35912910	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3825778	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4646561	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4646565	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4646574	0.83[AMR][1000 genomes]
rs4646578	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4646583	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4646587	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4646591	0.86[AMR][1000 genomes]
rs4646601	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4646608	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4646618	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4646632	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4646637	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4646643	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4646644	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55723752	0.88[AMR][1000 genomes]
rs55866609	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs56066922	0.85[EUR][1000 genomes]
rs56141372	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56183601	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56280454	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56404147	0.86[EUR][1000 genomes]
rs7161823	0.85[EUR][1000 genomes]
rs7178015	0.93[ASN][1000 genomes]
rs74017072	0.83[EUR][1000 genomes]
rs74017096	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7495284	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8041300	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv569593	chr15:58201698-58308650	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv904256	chr15:58253269-58274229	Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv904257	chr15:58253894-58281035	Bivalent Enhancer Enhancers Weak transcription Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv904258	chr15:58255305-58281035	ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv904259	chr15:58256296-58274229	Weak transcription Strong transcription Bivalent Enhancer Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv904260	chr15:58257123-58276747	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv904261	chr15:58258424-58347260	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58253800-58271600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr15:58253800-58284800	Weak transcription	Ovary	ovary
3	chr15:58258000-58272200	Weak transcription	Right Ventricle	heart
4	chr15:58259000-58264600	Weak transcription	Fetal Lung	lung
5	chr15:58260400-58272000	Weak transcription	Fetal Kidney	kidney
6	chr15:58262600-58287800	Weak transcription	Fetal Muscle Leg	muscle
7	chr15:58262800-58272000	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links