Variant report

Variant	rs12593050
Chromosome Location	chr15:58224273-58224274
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10518951	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1078777	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1125360	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12591551	0.84[EUR][1000 genomes]
rs12591715	0.82[EUR][1000 genomes]
rs12591835	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12592533	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12592773	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12592810	0.87[EUR][1000 genomes]
rs12593414	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12594689	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12595264	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1372367	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16939707	0.86[AMR][1000 genomes]
rs16939727	0.81[EUR][1000 genomes]
rs16953355	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16977845	0.84[ASN][1000 genomes]
rs16977858	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16977861	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16977865	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16977883	0.84[EUR][1000 genomes]
rs1837850	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1874157	0.81[EUR][1000 genomes]
rs1874158	0.81[EUR][1000 genomes]
rs34165083	0.83[EUR][1000 genomes]
rs34500662	0.91[AFR][1000 genomes]
rs34579465	0.84[AFR][1000 genomes]
rs35016264	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35056852	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35251510	0.84[AFR][1000 genomes]
rs35385267	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35912910	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3825778	0.91[EUR][1000 genomes]
rs4646561	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4646565	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4646574	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4646583	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4646587	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4646591	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4646601	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646608	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4646618	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4646632	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4646637	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4646643	0.86[AMR][1000 genomes]
rs55723752	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55757800	0.90[EUR][1000 genomes]
rs55866609	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56066922	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56141372	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56183601	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56280454	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56404147	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7161823	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7178015	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72735457	0.89[ASN][1000 genomes]
rs74017072	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs74017096	0.84[EUR][1000 genomes]
rs7495284	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8041300	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv569593	chr15:58201698-58308650	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58223400-58224600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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