Variant report

Variant	rs35016264
Chromosome Location	chr15:58251846-58251847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr15:58251653-58251923	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr15:58242506-58254000	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58251581..58253908-chr15:58262136..58263877,2	K562	blood:

Variant related genes	Relation type
ALDH1A2	TF binding region

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10518951	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1078777	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1125360	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12591551	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12591715	0.80[AMR][1000 genomes]
rs12591835	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12592533	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12592773	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12592810	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12593050	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12593414	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12594689	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12595264	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1372367	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16939707	0.88[AMR][1000 genomes]
rs16953355	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16977858	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16977861	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16977865	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16977883	0.81[EUR][1000 genomes]
rs1837850	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34165083	0.80[AMR][1000 genomes]
rs34500662	0.84[AFR][1000 genomes]
rs34579465	0.92[AFR][1000 genomes]
rs35056852	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35251510	0.92[AFR][1000 genomes]
rs35385267	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35912910	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3825778	0.88[EUR][1000 genomes]
rs4646561	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4646565	0.88[AMR][1000 genomes]
rs4646574	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4646578	0.80[AMR][1000 genomes]
rs4646583	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4646587	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4646591	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4646601	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4646608	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4646618	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4646632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4646637	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4646643	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4646644	0.93[ASN][1000 genomes]
rs55723752	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55757800	0.87[EUR][1000 genomes]
rs55866609	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56066922	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56141372	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56183601	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56280454	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56404147	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7161823	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7178015	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74017072	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74017096	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7495284	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8041300	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv569593	chr15:58201698-58308650	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58240200-58252800	Weak transcription	Fetal Lung	lung
2	chr15:58243800-58253800	Weak transcription	Right Atrium	heart
3	chr15:58247000-58253600	Weak transcription	Fetal Heart	heart
4	chr15:58247400-58254000	Strong transcription	Fetal Kidney	kidney
5	chr15:58248000-58253000	Weak transcription	Ovary	ovary
6	chr15:58248800-58262400	Weak transcription	Fetal Muscle Leg	muscle
7	chr15:58249000-58259200	Strong transcription	K562	blood
8	chr15:58249600-58254200	Weak transcription	HMEC	breast
9	chr15:58249800-58255000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:58250400-58253800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr15:58251000-58255200	Weak transcription	Placenta	Placenta

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