Variant report

Variant	rs16977861
Chromosome Location	chr15:58235454-58235455
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58233582..58235839-chr15:58240591..58242215,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10518951	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1078777	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1125360	0.83[EUR][1000 genomes]
rs12591551	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs12591835	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12592533	0.81[EUR][1000 genomes]
rs12592773	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12592810	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12593050	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12593414	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12594689	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12595264	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1372367	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1550575	0.82[ASN][1000 genomes]
rs1550576	0.82[ASN][1000 genomes]
rs16939707	1.00[CEU][hapmap]
rs16939727	0.85[CEU][hapmap]
rs16939733	0.85[CEU][hapmap]
rs16953355	0.91[EUR][1000 genomes]
rs16977858	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16977865	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16977883	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs1837850	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1874157	0.85[CEU][hapmap]
rs1874158	0.85[CEU][hapmap]
rs35016264	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35056852	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs35385267	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35912910	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3825778	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4646561	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs4646565	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs4646574	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs4646578	0.82[CEU][hapmap]
rs4646583	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4646587	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs4646591	0.82[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4646601	0.89[EUR][1000 genomes]
rs4646608	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4646618	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4646632	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4646637	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4646643	0.85[CEU][hapmap]
rs4646644	0.85[CEU][hapmap];0.88[AMR][1000 genomes]
rs55723752	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55757800	0.90[EUR][1000 genomes]
rs55866609	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56066922	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56141372	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56183601	0.89[EUR][1000 genomes]
rs56280454	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56404147	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7161823	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7178015	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs74017072	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74017096	0.81[EUR][1000 genomes]
rs7495284	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8041300	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv569593	chr15:58201698-58308650	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58234200-58242200	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links