Variant report

Variant	rs1550575
Chromosome Location	chr15:58213409-58213410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58211017..58213886-chr15:58215775..58217825,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10518951	0.84[ASN][1000 genomes]
rs1078777	0.84[ASN][1000 genomes]
rs11857127	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11857885	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12592773	0.84[ASN][1000 genomes]
rs12594429	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12594689	0.95[ASN][1000 genomes]
rs12595264	0.95[ASN][1000 genomes]
rs1372367	0.88[ASN][1000 genomes]
rs1550576	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16977845	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16977861	0.82[ASN][1000 genomes]
rs1899430	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35385267	0.84[ASN][1000 genomes]
rs35912910	0.84[ASN][1000 genomes]
rs56066922	0.84[ASN][1000 genomes]
rs56141372	0.80[ASN][1000 genomes]
rs56280454	0.95[ASN][1000 genomes]
rs61060572	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7161823	0.84[ASN][1000 genomes]
rs7182757	0.82[AMR][1000 genomes]
rs72735454	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72735457	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74017072	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv569593	chr15:58201698-58308650	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58207200-58214600	Weak transcription	Fetal Kidney	kidney
2	chr15:58207400-58214600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:58207600-58215000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:58209200-58214800	Weak transcription	Lung	lung
5	chr15:58209200-58215000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr15:58209400-58213800	Weak transcription	Right Atrium	heart
7	chr15:58209400-58214600	Weak transcription	Fetal Lung	lung
8	chr15:58211000-58214400	Weak transcription	Pancreas	Pancrea
9	chr15:58211200-58214200	Weak transcription	Liver	Liver
10	chr15:58211800-58213600	Enhancers	Stomach Mucosa	stomach
11	chr15:58211800-58217200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr15:58212200-58216400	Enhancers	Left Ventricle	heart
13	chr15:58212400-58217400	Enhancers	Fetal Muscle Leg	muscle
14	chr15:58212600-58215200	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr15:58212600-58217000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr15:58212800-58213800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr15:58212800-58214400	Weak transcription	Spleen	Spleen
18	chr15:58212800-58216000	Weak transcription	Esophagus	oesophagus
19	chr15:58213000-58215400	Enhancers	HUVEC	blood vessel
20	chr15:58213200-58214000	Enhancers	HSMM	muscle
21	chr15:58213200-58214000	Enhancers	HSMMtube	muscle
22	chr15:58213200-58215400	Enhancers	Right Ventricle	heart
23	chr15:58213200-58216600	Enhancers	Ovary	ovary
24	chr15:58213200-58217200	Enhancers	Adipose Nuclei	Adipose
25	chr15:58213400-58213600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr15:58213400-58213600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:58213400-58213600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr15:58213400-58214000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr15:58213400-58214000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr15:58213400-58214200	Weak transcription	Psoas Muscle	Psoas
31	chr15:58213400-58214400	Weak transcription	Colon Smooth Muscle	Colon
32	chr15:58213400-58214400	Weak transcription	Fetal Heart	heart
33	chr15:58213400-58214800	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links