Variant report

Variant	rs16977845
Chromosome Location	chr15:58212367-58212368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58211017..58213886-chr15:58215775..58217825,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11856655	0.82[AMR][1000 genomes]
rs11857127	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11857885	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12592533	0.85[ASN][1000 genomes]
rs12593050	0.84[ASN][1000 genomes]
rs12594429	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12594689	0.81[ASN][1000 genomes]
rs12595264	0.81[ASN][1000 genomes]
rs1550575	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1550576	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16977858	0.83[ASN][1000 genomes]
rs1899430	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56280454	0.81[ASN][1000 genomes]
rs61060572	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72735454	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72735457	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv569593	chr15:58201698-58308650	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58207200-58214600	Weak transcription	Fetal Kidney	kidney
2	chr15:58207400-58214600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:58207600-58215000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:58208800-58213200	Weak transcription	Right Ventricle	heart
5	chr15:58209200-58214800	Weak transcription	Lung	lung
6	chr15:58209200-58215000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr15:58209400-58213200	Weak transcription	HSMMtube	muscle
8	chr15:58209400-58213800	Weak transcription	Right Atrium	heart
9	chr15:58209400-58214600	Weak transcription	Fetal Lung	lung
10	chr15:58210200-58212400	Weak transcription	Fetal Heart	heart
11	chr15:58210200-58213200	Weak transcription	Ovary	ovary
12	chr15:58211000-58214400	Weak transcription	Pancreas	Pancrea
13	chr15:58211200-58214200	Weak transcription	Liver	Liver
14	chr15:58211400-58213200	Weak transcription	Psoas Muscle	Psoas
15	chr15:58211800-58212800	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr15:58211800-58213400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:58211800-58213600	Enhancers	Stomach Mucosa	stomach
18	chr15:58211800-58217200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr15:58212000-58212400	Enhancers	A549	lung
20	chr15:58212000-58212800	Enhancers	Spleen	Spleen
21	chr15:58212000-58213400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr15:58212200-58213400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr15:58212200-58216400	Enhancers	Left Ventricle	heart

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