Variant report

Variant	rs72735457
Chromosome Location	chr15:58208814-58208815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11856655	0.88[AMR][1000 genomes]
rs11857127	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11857885	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12592533	0.90[ASN][1000 genomes]
rs12593050	0.89[ASN][1000 genomes]
rs12594429	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12594689	0.86[ASN][1000 genomes]
rs12595264	0.86[ASN][1000 genomes]
rs1550575	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1550576	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16977845	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16977858	0.88[ASN][1000 genomes]
rs1899430	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56404147	0.85[ASN][1000 genomes]
rs61060572	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72735451	0.84[AMR][1000 genomes]
rs72735454	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv569593	chr15:58201698-58308650	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58203400-58210200	Enhancers	Ovary	ovary
2	chr15:58207200-58209000	Enhancers	Fetal Muscle Leg	muscle
3	chr15:58207200-58209200	Enhancers	Lung	lung
4	chr15:58207200-58214600	Weak transcription	Fetal Kidney	kidney
5	chr15:58207400-58210000	Weak transcription	Psoas Muscle	Psoas
6	chr15:58207400-58214600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr15:58207600-58209200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr15:58207600-58211800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr15:58207600-58215000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:58208000-58209400	Enhancers	Right Atrium	heart
11	chr15:58208200-58209200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr15:58208200-58210200	Enhancers	Fetal Heart	heart
13	chr15:58208400-58209400	Enhancers	HSMMtube	muscle
14	chr15:58208400-58211000	Enhancers	Pancreas	Pancrea
15	chr15:58208600-58209200	Weak transcription	Left Ventricle	heart
16	chr15:58208600-58209400	Enhancers	Fetal Lung	lung
17	chr15:58208600-58212000	Weak transcription	Spleen	Spleen
18	chr15:58208800-58213200	Weak transcription	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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