Variant report

Variant	rs72735454
Chromosome Location	chr15:58204071-58204072
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11856655	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11857127	0.81[EUR][1000 genomes]
rs11857885	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12594429	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1550575	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1550576	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16977845	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1899430	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61060572	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7182757	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72735451	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72735457	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv569593	chr15:58201698-58308650	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58203400-58210200	Enhancers	Ovary	ovary
2	chr15:58204000-58205400	Weak transcription	Fetal Kidney	kidney
3	chr15:58204000-58206000	Weak transcription	Left Ventricle	heart
4	chr15:58204000-58206800	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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