Variant report

Variant	rs11254115
Chromosome Location	chr10:5747423-5747424
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:5734698..5736593-chr10:5746537..5749432,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108021	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11254828	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11254898	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11255139	0.81[AMR][1000 genomes]
rs11255237	0.81[AMR][1000 genomes]
rs11255288	0.81[AMR][1000 genomes]
rs12257412	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12571055	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12572339	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1567708	0.81[ASN][1000 genomes]
rs2246268	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2275772	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2669133	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2669139	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2797490	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2797492	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2797497	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34404996	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3750636	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3793708	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3793714	0.82[AMR][1000 genomes]
rs3924378	0.83[ASN][1000 genomes]
rs57103262	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58502403	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59827083	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60864347	0.81[AMR][1000 genomes]
rs7089693	0.83[ASN][1000 genomes]
rs7096328	0.94[ASN][1000 genomes]
rs73610559	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	esv2759729	chr10:5557024-5804780	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2758209	chr10:5637111-5804780	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	esv1796213	chr10:5716555-5766165	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv522415	chr10:5721653-5768493	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv1050663	chr10:5737979-5785918	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv528504	chr10:5739054-5754611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5734800-5763400	Weak transcription	HSMM	muscle
2	chr10:5735200-5749000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr10:5735200-5750600	Weak transcription	Gastric	stomach
4	chr10:5735200-5767000	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:5735400-5750800	Weak transcription	Spleen	Spleen
6	chr10:5735400-5761600	Weak transcription	NHEK	skin
7	chr10:5735400-5762000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:5735800-5752800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:5736200-5751600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:5736400-5753000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:5738600-5752400	Weak transcription	Primary B cells from cord blood	blood
12	chr10:5738600-5752800	Weak transcription	Right Atrium	heart
13	chr10:5738600-5769000	Weak transcription	Left Ventricle	heart
14	chr10:5739600-5752800	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr10:5740200-5752000	Weak transcription	Stomach Mucosa	stomach
16	chr10:5740200-5752800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr10:5740400-5768600	Weak transcription	Psoas Muscle	Psoas
18	chr10:5741400-5749000	Weak transcription	K562	blood
19	chr10:5741400-5760600	Weak transcription	Small Intestine	intestine
20	chr10:5741400-5765600	Weak transcription	A549	lung
21	chr10:5741600-5750200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr10:5741600-5753400	Weak transcription	Primary B cells from peripheral blood	blood
23	chr10:5742200-5748800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr10:5742600-5749000	Weak transcription	Primary T cells from cord blood	blood
25	chr10:5743200-5752400	Weak transcription	Brain Substantia Nigra	brain
26	chr10:5743200-5753600	Weak transcription	HepG2	liver
27	chr10:5743200-5762600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr10:5743600-5749000	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr10:5744200-5748200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr10:5744200-5749400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr10:5744200-5753000	Weak transcription	Primary hematopoietic stem cells	blood
32	chr10:5745000-5749000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr10:5745000-5750200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr10:5745000-5752000	Weak transcription	Liver	Liver
35	chr10:5746800-5752800	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr10:5747200-5748200	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr10:5747200-5752000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:5747400-5749800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr10:5747400-5751600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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