Variant report

Variant	rs73610559
Chromosome Location	chr10:5731774-5731775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:5729799..5732173-chr10:5916064..5918790,2	MCF-7	breast:
2	chr10:5722939..5725566-chr10:5730999..5734048,3	K562	blood:
3	chr10:5729840..5732495-chr10:5739235..5741106,2	MCF-7	breast:
4	chr10:5488381..5491037-chr10:5730323..5732095,2	MCF-7	breast:
5	chr10:5730140..5732838-chr10:5762555..5765263,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173848	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11254115	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11254828	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11254898	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12257412	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12571055	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12572339	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2246268	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2275772	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2669133	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2669139	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2797490	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2797492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2797497	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34404996	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3750636	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3793708	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57103262	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58502403	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59827083	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7096328	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	esv2759729	chr10:5557024-5804780	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2758209	chr10:5637111-5804780	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv549895	chr10:5712310-5735648	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1796213	chr10:5716555-5766165	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv522415	chr10:5721653-5768493	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
8	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5727800-5733800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:5728000-5734400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:5728200-5733600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:5728200-5733800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:5728200-5733800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:5728200-5733800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:5728200-5733800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr10:5728200-5733800	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:5728200-5733800	Weak transcription	Gastric	stomach
10	chr10:5728200-5733800	Weak transcription	Lung	lung
11	chr10:5728200-5734000	Weak transcription	Esophagus	oesophagus
12	chr10:5728200-5734200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:5728200-5734400	Weak transcription	Aorta	Aorta
14	chr10:5728400-5734400	Weak transcription	HSMM	muscle
15	chr10:5728600-5732400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr10:5728600-5732400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:5728600-5733200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr10:5728600-5733400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr10:5728600-5733600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr10:5728600-5733600	Weak transcription	Fetal Heart	heart
21	chr10:5728600-5733800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr10:5728600-5733800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:5728600-5733800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr10:5728600-5733800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr10:5728600-5733800	Weak transcription	Brain Germinal Matrix	brain
26	chr10:5728600-5733800	Weak transcription	Brain Substantia Nigra	brain
27	chr10:5728600-5733800	Weak transcription	Fetal Thymus	thymus
28	chr10:5728600-5733800	Weak transcription	Psoas Muscle	Psoas
29	chr10:5728600-5734000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr10:5728600-5734000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr10:5728600-5734200	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr10:5728600-5734200	Weak transcription	Brain Hippocampus Middle	brain
33	chr10:5728600-5734200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr10:5728600-5734200	Weak transcription	Right Ventricle	heart
35	chr10:5728600-5734200	Weak transcription	Stomach Smooth Muscle	stomach
36	chr10:5728600-5734200	Weak transcription	Thymus	Thymus
37	chr10:5728800-5732400	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr10:5728800-5732400	Weak transcription	Colon Smooth Muscle	Colon
39	chr10:5728800-5732400	Weak transcription	A549	lung
40	chr10:5728800-5732400	Weak transcription	NHEK	skin
41	chr10:5728800-5732600	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr10:5728800-5733400	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr10:5728800-5733600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:5728800-5733600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr10:5728800-5733600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr10:5728800-5733600	Weak transcription	Liver	Liver
47	chr10:5728800-5733600	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr10:5728800-5733600	Weak transcription	NH-A	brain
49	chr10:5728800-5733600	Weak transcription	NHDF-Ad	bronchial
50	chr10:5728800-5733800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links