Variant report

Variant	rs2797490
Chromosome Location	chr10:5787667-5787668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:5782641..5784620-chr10:5787406..5789176,2	MCF-7	breast:
2	chr10:5782892..5785876-chr10:5786792..5789358,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11254115	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11254828	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11254898	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11255139	0.82[ASN][1000 genomes]
rs12257412	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12571055	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12572339	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1567708	0.85[ASN][1000 genomes]
rs2246268	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2275772	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2669133	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2669139	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2797492	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2797497	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34404996	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3750636	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3793708	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3924378	0.85[ASN][1000 genomes]
rs57103262	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58502403	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59827083	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7089693	0.86[ASN][1000 genomes]
rs7096328	0.88[ASN][1000 genomes]
rs73610559	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	esv2759729	chr10:5557024-5804780	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2758209	chr10:5637111-5804780	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5762200-5795400	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr10:5762400-5794600	Strong transcription	Primary T helper cells PMA-I stimulated	--
3	chr10:5762600-5843400	Strong transcription	Dnd41	blood
4	chr10:5762800-5793000	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr10:5762800-5843000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:5763000-5795000	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr10:5763400-5788600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr10:5767200-5792800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr10:5768000-5788400	Weak transcription	Fetal Brain Male	brain
10	chr10:5768000-5849400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:5771800-5790000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:5773000-5788400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:5773800-5788200	Weak transcription	Fetal Kidney	kidney
14	chr10:5774000-5788200	Weak transcription	Gastric	stomach
15	chr10:5774400-5788200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr10:5774400-5788200	Weak transcription	Pancreas	Pancrea
17	chr10:5774400-5788400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr10:5774800-5788200	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr10:5775200-5794400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:5777000-5795800	Strong transcription	Fetal Thymus	thymus
21	chr10:5779000-5804600	Strong transcription	A549	lung
22	chr10:5779200-5796600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr10:5779400-5795200	Strong transcription	Primary B cells from cord blood	blood
24	chr10:5779600-5788200	Weak transcription	Fetal Intestine Small	intestine
25	chr10:5779600-5793800	Strong transcription	HSMM	muscle
26	chr10:5779800-5789800	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr10:5780400-5788600	Strong transcription	Primary T cells from cord blood	blood
28	chr10:5780400-5790000	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr10:5780400-5791400	Strong transcription	Liver	Liver
30	chr10:5780400-5791400	Strong transcription	Skeletal Muscle Female	skeletal muscle
31	chr10:5780600-5792000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr10:5780600-5793000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr10:5780800-5792200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:5781200-5789800	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr10:5781200-5791400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr10:5781400-5790800	Strong transcription	HSMMtube	muscle
37	chr10:5781400-5791600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr10:5781400-5792000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr10:5781400-5792600	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr10:5781400-5793000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:5781400-5818600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr10:5781600-5789200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr10:5781600-5790600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr10:5781600-5791800	Strong transcription	Thymus	Thymus
45	chr10:5781600-5792000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr10:5781600-5792200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr10:5781600-5792400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr10:5781600-5792600	Strong transcription	Osteobl	bone
49	chr10:5781600-5794400	Strong transcription	Adipose Nuclei	Adipose
50	chr10:5781600-5796200	Strong transcription	Fetal Muscle Leg	muscle

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