Variant report

Variant	rs58502403
Chromosome Location	chr10:5768356-5768357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:5725933..5727611-chr10:5766306..5768774,2	MCF-7	breast:
2	chr10:5766311..5769267-chr10:5770852..5774721,4	K562	blood:
3	chr10:5733545..5736331-chr10:5766284..5768389,2	K562	blood:

Variant related genes	Relation type
ENSG00000108021	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11254115	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11254828	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11254898	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11255139	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11255237	0.81[AMR][1000 genomes]
rs11255288	0.81[AMR][1000 genomes]
rs12257412	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12571055	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12572339	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1567708	0.83[ASN][1000 genomes]
rs2246268	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2275772	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2669133	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2669139	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2797490	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2797492	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2797497	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34404996	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3750636	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3793708	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3793714	0.82[AMR][1000 genomes]
rs3924378	0.83[ASN][1000 genomes]
rs57103262	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59827083	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60864347	0.81[AMR][1000 genomes]
rs7089693	0.84[ASN][1000 genomes]
rs7096328	0.92[ASN][1000 genomes]
rs73610559	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	esv2759729	chr10:5557024-5804780	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2758209	chr10:5637111-5804780	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv522415	chr10:5721653-5768493	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv1050663	chr10:5737979-5785918	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv519891	chr10:5753737-5768493	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5738600-5769000	Weak transcription	Left Ventricle	heart
2	chr10:5740400-5768600	Weak transcription	Psoas Muscle	Psoas
3	chr10:5753800-5768600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr10:5753800-5769000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr10:5753800-5769000	Weak transcription	Thymus	Thymus
6	chr10:5753800-5772200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr10:5753800-5772400	Weak transcription	Brain Anterior Caudate	brain
8	chr10:5753800-5772600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:5753800-5772800	Weak transcription	Brain Hippocampus Middle	brain
10	chr10:5753800-5773200	Weak transcription	NHLF	lung
11	chr10:5753800-5783400	Weak transcription	Brain Substantia Nigra	brain
12	chr10:5753800-5787000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr10:5754000-5768600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr10:5754000-5772800	Weak transcription	Ovary	ovary
15	chr10:5754000-5773200	Weak transcription	Colon Smooth Muscle	Colon
16	chr10:5754200-5773000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr10:5754400-5781600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr10:5755400-5772600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr10:5757000-5772800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr10:5757800-5772600	Weak transcription	Right Ventricle	heart
21	chr10:5758600-5772600	Weak transcription	Esophagus	oesophagus
22	chr10:5759600-5772800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:5761000-5768400	Weak transcription	Fetal Lung	lung
24	chr10:5761000-5768800	Weak transcription	NHDF-Ad	bronchial
25	chr10:5761000-5772800	Weak transcription	Small Intestine	intestine
26	chr10:5761000-5773200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr10:5761400-5772600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr10:5762000-5769000	Weak transcription	Hela-S3	cervix
29	chr10:5762200-5783000	Weak transcription	Stomach Mucosa	stomach
30	chr10:5762200-5795400	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr10:5762400-5768400	Weak transcription	Colonic Mucosa	Colon
32	chr10:5762400-5768800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr10:5762400-5772400	Weak transcription	HSMMtube	muscle
34	chr10:5762400-5772600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr10:5762400-5772600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr10:5762400-5775000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr10:5762400-5794600	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr10:5762600-5843400	Strong transcription	Dnd41	blood
39	chr10:5762800-5768800	Weak transcription	HUVEC	blood vessel
40	chr10:5762800-5772600	Weak transcription	Fetal Brain Female	brain
41	chr10:5762800-5775200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr10:5762800-5778000	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr10:5762800-5778000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr10:5762800-5779800	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr10:5762800-5793000	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr10:5762800-5843000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr10:5763000-5795000	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr10:5763200-5772000	Weak transcription	Brain Germinal Matrix	brain
49	chr10:5763200-5772800	Weak transcription	Aorta	Aorta
50	chr10:5763200-5778800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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