Variant report

Variant	rs11265204
Chromosome Location	chr1:159439913-159439914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10908720	0.84[JPT][hapmap]
rs11265196	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11265205	0.92[ASN][1000 genomes]
rs11811256	0.89[ASN][1000 genomes]
rs12023055	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12034243	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12047230	0.89[ASN][1000 genomes]
rs12133577	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12724895	0.87[CHD][hapmap]
rs12734524	0.91[ASN][1000 genomes]
rs2427836	0.89[ASW][hapmap]
rs2494264	0.89[ASW][hapmap]
rs28629949	0.84[ASN][1000 genomes]
rs34388918	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4261112	0.93[ASN][1000 genomes]
rs61821535	0.93[ASN][1000 genomes]
rs7521220	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3334702	chr1:159415928-159442349	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv432975	chr1:159431927-159461927	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs11265204	AQP10	cis	cerebellum	SCAN
rs11265204	ARHGEF11	cis	cerebellum	SCAN
rs11265204	DARC	cis	cerebellum	SCAN
rs11265204	PMVK	cis	cerebellum	SCAN
rs11265204	C1orf189	cis	cerebellum	SCAN
rs11265204	APCS	cis	cerebellum	SCAN
rs11265204	OR10R2	cis	parietal	SCAN
rs11265204	SLC39A1	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159438200-159440200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:159438200-159444600	Enhancers	HUVEC	blood vessel
3	chr1:159439000-159440400	Enhancers	Liver	Liver
4	chr1:159439400-159440200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:159439600-159440000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr1:159439600-159440000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr1:159439600-159440200	Enhancers	Right Atrium	heart
8	chr1:159439600-159441200	Weak transcription	Osteobl	bone
9	chr1:159439600-159445400	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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