Variant report

Variant	rs12023055
Chromosome Location	chr1:159418008-159418009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10908720	0.82[ASN][1000 genomes]
rs11265191	0.82[ASN][1000 genomes]
rs11265196	0.97[ASN][1000 genomes]
rs11265204	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11265205	0.89[ASN][1000 genomes]
rs11811256	0.88[ASN][1000 genomes]
rs12034243	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12047230	0.89[ASN][1000 genomes]
rs12048482	0.82[ASN][1000 genomes]
rs12133577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12145079	0.82[ASN][1000 genomes]
rs12734524	0.90[ASN][1000 genomes]
rs28629949	0.83[ASN][1000 genomes]
rs34388918	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4261112	0.96[ASN][1000 genomes]
rs4656235	0.82[ASN][1000 genomes]
rs61821535	0.92[ASN][1000 genomes]
rs7521220	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3334702	chr1:159415928-159442349	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159416800-159418200	Enhancers	HUVEC	blood vessel

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links