Variant report

Variant	rs11265196
Chromosome Location	chr1:159418212-159418213
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10908720	0.90[ASW][hapmap];0.96[CEU][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];0.84[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11265191	0.96[CEU][hapmap];0.90[CHB][hapmap];0.84[CHD][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11265194	0.80[CEU][hapmap]
rs11265204	0.90[ASW][hapmap];0.81[CEU][hapmap];0.84[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11265205	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11811256	0.90[ASN][1000 genomes]
rs12023055	0.97[ASN][1000 genomes]
rs12034243	0.81[CEU][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs12047230	0.86[ASN][1000 genomes]
rs12048482	0.96[CEU][hapmap];0.90[CHB][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12133577	0.89[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs12145079	0.90[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12724895	0.87[CHD][hapmap]
rs12734524	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2427836	0.81[ASW][hapmap]
rs2494264	0.81[ASW][hapmap]
rs28629949	0.81[ASN][1000 genomes]
rs34388918	0.94[ASN][1000 genomes]
rs4261112	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4360519	0.80[CEU][hapmap];0.81[TSI][hapmap]
rs4656235	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61821535	0.89[ASN][1000 genomes]
rs7521220	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3334702	chr1:159415928-159442349	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs11265196	C1orf189	cis	cerebellum	SCAN
rs11265196	SLC39A1	cis	cerebellum	SCAN
rs11265196	DARC	cis	cerebellum	SCAN
rs11265196	OR10Z1	cis	parietal	SCAN
rs11265196	APCS	cis	cerebellum	SCAN
rs11265196	NUP210L	cis	parietal	SCAN
rs11265196	PMVK	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159418200-159418600	Flanking Active TSS	HUVEC	blood vessel

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