Variant report

Variant	rs11265205
Chromosome Location	chr1:159443054-159443055
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10908720	0.83[AMR][1000 genomes]
rs11265196	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11265204	0.92[ASN][1000 genomes]
rs11811256	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12023055	0.89[ASN][1000 genomes]
rs12034243	0.92[ASN][1000 genomes]
rs12047230	0.93[ASN][1000 genomes]
rs12133577	0.89[ASN][1000 genomes]
rs12145079	0.83[AMR][1000 genomes]
rs12734524	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28629949	0.87[ASN][1000 genomes]
rs34388918	0.86[ASN][1000 genomes]
rs4261112	0.90[ASN][1000 genomes]
rs61821535	0.96[ASN][1000 genomes]
rs7521220	0.92[AFR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432975	chr1:159431927-159461927	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159438200-159444600	Enhancers	HUVEC	blood vessel
2	chr1:159439600-159445400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr1:159440400-159456600	Weak transcription	Liver	Liver
4	chr1:159442600-159443400	Enhancers	HMEC	breast
5	chr1:159442600-159443600	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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