Variant report

Variant	rs112988421
Chromosome Location	chr16:34423150-34423151
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr16:34422971-34423261	T-47D	breast:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
2	CTCF	chr16:34423078-34423185	Pancreas_OC	pancreas:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
3	CTCF	chr16:34423040-34423190	GM12865	blood:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
4	CTCF	chr16:34423000-34423150	HCT-116	colon:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
5	CTCF	chr16:34423040-34423190	RPTEC	kidney:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
6	CTCF	chr16:34423060-34423210	HMEC	breast:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
7	CTCF	chr16:34423040-34423190	MCF-7	breast:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
8	CTCF	chr16:34423089-34423165	GM19238	blood:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
9	CTCF	chr16:34423020-34423170	GM12864	blood:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
10	CTCF	chr16:34423020-34423256	ProgFib	skin:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
11	CTCF	chr16:34423040-34423190	HEK293	kidney:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
12	MYC	chr16:34423054-34423206	MCF10A-Er-Src	breast:	n/a	n/a
13	RAD21	chr16:34422987-34423227	HepG2	liver:	n/a	chr16:34423112-34423131
14	RAD21	chr16:34422915-34423320	SK-N-SH_RA	brain:	n/a	chr16:34423261-34423271 chr16:34423112-34423131
15	CTCF	chr16:34423020-34423170	HepG2	liver:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
16	CTCF	chr16:34423031-34423220	GM12891	blood:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
17	CTCF	chr16:34423060-34423210	HepG2	liver:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
18	CTCF	chr16:34422992-34423211	HepG2	liver:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
19	CTCF	chr16:34422965-34423278	NHEK	skin:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
20	CTCF	chr16:34423000-34423150	SAEC	small airway:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
21	MYC	chr16:34422991-34423269	MCF-7	breast:	n/a	chr16:34423249-34423258
22	CTCF	chr16:34423060-34423210	GM12872	blood:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
23	CTCF	chr16:34423065-34423185	Medullo	brain:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
24	CTCF	chr16:34423060-34423210	K562	blood:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
25	CTCF	chr16:34423014-34423199	LNCaP	prostate:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
26	CTCF	chr16:34422985-34423244	MCF-7	breast:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
27	CTCF	chr16:34423060-34423210	HEK293	kidney:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
28	CTCF	chr16:34423040-34423190	GM12868	blood:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
29	CTCF	chr16:34423000-34423150	WERI-Rb-1	eye:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
30	CTCF	chr16:34423040-34423190	HCPEpiC	choroid plexus:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
31	CTCF	chr16:34422979-34423262	K562	blood:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
32	MYC	chr16:34423013-34423229	MCF-7	breast:	n/a	n/a
33	CTCF	chr16:34423033-34423217	K562	blood:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
34	CTCF	chr16:34423040-34423190	GM12866	blood:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
35	CTCF	chr16:34423040-34423190	GM12873	blood:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
36	CTCF	chr16:34423006-34423257	SK-N-SH_RA	brain:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
37	MYC	chr16:34423071-34423230	MCF-7	breast:	n/a	n/a
38	CTCF	chr16:34422973-34423258	Fibrobl	skin:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
39	CTCF	chr16:34422905-34423505	SK-N-SH	brain:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
40	CTCF	chr16:34423000-34423150	GM12873	blood:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
41	CTCF	chr16:34422987-34423251	MCF-7	breast:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
42	CTCF	chr16:34423070-34423189	Hela-S3	cervix:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
43	CTCF	chr16:34422994-34423205	HepG2	liver:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
44	CTCF	chr16:34422991-34423244	MCF-7	breast:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
45	CTCF	chr16:34423000-34423150	RPTEC	kidney:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
46	CTCF	chr16:34423060-34423210	WERI-Rb-1	eye:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
47	POLR2A	chr16:34423103-34423157	MCF-7	breast:	n/a	n/a
48	CTCF	chr16:34423076-34423170	GM19239	blood:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
49	CTCF	chr16:34423006-34423240	MCF-7	breast:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129
50	CTCF	chr16:34423040-34423190	NHEK	skin:	n/a	chr16:34423112-34423128 chr16:34423114-34423127 chr16:34423113-34423134 chr16:34423111-34423129

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:34422640..34423667-chr16:34625487..34626782,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260590	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32538	chr16:33935506-34459464	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
2	nsv431453	chr16:33940200-34760967	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	74 gene(s)	inside rSNPs	diseases
3	nsv542904	chr16:33942289-34427860	ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
4	nsv906655	chr16:34176875-34597156	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	nsv1066136	chr16:34197339-34434323	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv1064842	chr16:34197339-34472275	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv1063819	chr16:34197339-34492332	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
8	nsv1056658	chr16:34197339-34682514	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
9	nsv917674	chr16:34201887-34682588	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
10	nsv1067686	chr16:34202088-35147508	ZNF genes & repeats Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
11	nsv532260	chr16:34202088-35147508	Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
12	nsv457484	chr16:34221454-34535583	ZNF genes & repeats Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
13	nsv572376	chr16:34221454-34535583	ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
14	nsv521817	chr16:34221454-35168832	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
15	nsv521994	chr16:34221454-35168832	Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
16	nsv906656	chr16:34243979-34535583	ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
17	nsv516385	chr16:34259805-34805859	ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
18	esv2751557	chr16:34263599-34757071	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
19	nsv906657	chr16:34284743-34517789	ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
20	nsv431454	chr16:34321463-34790434	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
21	nsv428326	chr16:34357763-34769642	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
22	nsv431455	chr16:34359599-34796499	ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
23	esv2758422	chr16:34362213-34769642	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
24	nsv510685	chr16:34373795-34438368	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
25	nsv143	chr16:34378952-34732704	Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
26	nsv144	chr16:34390796-34715796	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
27	esv2751558	chr16:34410569-34757071	Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
28	esv2756010	chr16:34421701-34733876	Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
29	nsv431456	chr16:34421701-34733876	Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
30	nsv431458	chr16:34421701-34760999	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
31	nsv145	chr16:34423094-34475651	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:34423000-34423200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links