Variant report

Variant	rs1147928
Chromosome Location	chr10:44920667-44920668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12248779	1.00[EUR][1000 genomes]
rs12262427	1.00[EUR][1000 genomes]
rs1253726	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1253947	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs169097	1.00[EUR][1000 genomes]
rs1779367	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1932716	1.00[AMR][1000 genomes]
rs2184772	1.00[AMR][1000 genomes]
rs266086	1.00[EUR][1000 genomes]
rs4948879	1.00[EUR][1000 genomes]
rs4948880	1.00[EUR][1000 genomes]
rs7091577	1.00[EUR][1000 genomes]
rs928567	1.00[AMR][1000 genomes]
rs982038	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv550701	chr10:44913113-44935055	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv971848	chr10:44919928-44923611	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44919800-44922800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
2	chr10:44920000-44922400	Enhancers	Fetal Muscle Leg	muscle
3	chr10:44920000-44922800	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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