Variant report

Variant	rs12248779
Chromosome Location	chr10:44974473-44974474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11239081	0.85[AFR][1000 genomes]
rs1147928	1.00[EUR][1000 genomes]
rs12262427	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1253726	1.00[EUR][1000 genomes]
rs1253947	1.00[EUR][1000 genomes]
rs169097	1.00[EUR][1000 genomes]
rs1779367	1.00[EUR][1000 genomes]
rs266086	1.00[EUR][1000 genomes]
rs4948879	1.00[EUR][1000 genomes]
rs4948880	1.00[EUR][1000 genomes]
rs7091577	1.00[EUR][1000 genomes]
rs982038	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv947901	chr10:44974108-45000726	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44971400-44974600	Enhancers	NHDF-Ad	bronchial
2	chr10:44971600-44975200	Enhancers	Fetal Muscle Leg	muscle
3	chr10:44971600-44975400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:44971600-44975400	Enhancers	Osteobl	bone
5	chr10:44971800-44975400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:44972000-44976000	Enhancers	Ovary	ovary
7	chr10:44972200-44975200	Enhancers	K562	blood
8	chr10:44972800-44974800	Weak transcription	Fetal Stomach	stomach
9	chr10:44972800-44975800	Weak transcription	Right Ventricle	heart
10	chr10:44973200-44976200	Enhancers	Adipose Nuclei	Adipose
11	chr10:44973600-44976000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr10:44973800-44974600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:44973800-44975200	Enhancers	Colon Smooth Muscle	Colon
14	chr10:44973800-44975400	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr10:44974000-44975200	Enhancers	Psoas Muscle	Psoas
16	chr10:44974200-44974600	Enhancers	Right Atrium	heart
17	chr10:44974400-44975000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:44974400-44975600	Weak transcription	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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