Variant report

Variant	rs1779367
Chromosome Location	chr10:44918864-44918865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1147928	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12248779	1.00[EUR][1000 genomes]
rs12262427	1.00[EUR][1000 genomes]
rs1253726	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1253742	1.00[AMR][1000 genomes]
rs1253947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs169097	1.00[EUR][1000 genomes]
rs266086	1.00[EUR][1000 genomes]
rs4948879	1.00[EUR][1000 genomes]
rs4948880	1.00[EUR][1000 genomes]
rs7091577	1.00[EUR][1000 genomes]
rs982038	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv550701	chr10:44913113-44935055	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44912200-44919800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44915800-44919600	Weak transcription	Pancreas	Pancrea
3	chr10:44916400-44919000	Enhancers	Fetal Muscle Leg	muscle
4	chr10:44918200-44919000	Enhancers	Fetal Stomach	stomach
5	chr10:44918400-44919000	Enhancers	Fetal Lung	lung
6	chr10:44918400-44919000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr10:44918600-44919600	Weak transcription	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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