Variant report

Variant	rs1253947
Chromosome Location	chr10:44911437-44911438
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1147928	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12248779	1.00[EUR][1000 genomes]
rs12262427	1.00[EUR][1000 genomes]
rs1253726	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1253742	1.00[AMR][1000 genomes]
rs169097	1.00[EUR][1000 genomes]
rs1779367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs266086	1.00[EUR][1000 genomes]
rs4948879	1.00[EUR][1000 genomes]
rs4948880	1.00[EUR][1000 genomes]
rs7091577	1.00[EUR][1000 genomes]
rs982038	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947900	chr10:44908354-44911811	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
2	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44907000-44918400	Weak transcription	Right Atrium	heart
2	chr10:44911200-44912600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:44911400-44911600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:44911400-44911600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:44911400-44911800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:44911400-44913000	Enhancers	Adipose Nuclei	Adipose
7	chr10:44911400-44913000	Enhancers	Colon Smooth Muscle	Colon
8	chr10:44911400-44913200	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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