Variant report

Variant	rs1148379
Chromosome Location	chr18:25695088-25695089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1148377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1148378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1148380	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1148381	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1219964	0.81[AMR][1000 genomes]
rs1220020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1220021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1220023	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1220026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1220033	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1220034	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1220035	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs1236172	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17468868	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[YRI][hapmap]
rs1785842	0.91[CHB][hapmap]
rs1785843	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25687200-25699800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr18:25687400-25696800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr18:25689800-25695600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr18:25690800-25695200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr18:25691000-25696600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr18:25691200-25695200	Weak transcription	Right Atrium	heart
7	chr18:25691400-25696800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr18:25691400-25703400	Weak transcription	Fetal Brain Male	brain
9	chr18:25691600-25695600	Enhancers	NHEK	skin
10	chr18:25692200-25703200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr18:25692400-25696600	Enhancers	HUVEC	blood vessel
12	chr18:25692800-25695200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr18:25692800-25695600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr18:25692800-25696800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr18:25692800-25699600	Weak transcription	Brain Substantia Nigra	brain
16	chr18:25692800-25700600	Enhancers	Fetal Heart	heart
17	chr18:25692800-25703600	Weak transcription	Ovary	ovary
18	chr18:25693000-25696000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr18:25693000-25697400	Weak transcription	Brain Germinal Matrix	brain
20	chr18:25693000-25699200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr18:25693200-25703600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr18:25693600-25696000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr18:25693800-25696200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr18:25694000-25695200	Flanking Active TSS	NH-A	brain
25	chr18:25694000-25695600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr18:25694000-25695600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr18:25694000-25696800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr18:25694200-25696200	Enhancers	HSMMtube	muscle
29	chr18:25694200-25696400	Enhancers	NHLF	lung
30	chr18:25694600-25695400	Enhancers	Right Ventricle	heart
31	chr18:25694600-25695600	Enhancers	HMEC	breast
32	chr18:25694600-25695800	Flanking Active TSS	Osteobl	bone
33	chr18:25694800-25695200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr18:25694800-25695400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr18:25694800-25695600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr18:25694800-25695600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
37	chr18:25694800-25696200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr18:25694800-25697400	Enhancers	HepG2	liver
39	chr18:25694800-25697600	Enhancers	Liver	Liver
40	chr18:25695000-25695200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr18:25695000-25695200	Flanking Active TSS	HSMM	muscle
42	chr18:25695000-25695400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
43	chr18:25695000-25695400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr18:25695000-25695400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr18:25695000-25695400	Enhancers	Brain Anterior Caudate	brain
46	chr18:25695000-25695400	Enhancers	Placenta Amnion	Placenta Amnion
47	chr18:25695000-25695400	Enhancers	Hela-S3	cervix
48	chr18:25695000-25695600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr18:25695000-25695600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr18:25695000-25695600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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