Variant report

Variant	rs1220034
Chromosome Location	chr18:25699351-25699352
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1148377	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1148378	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1148379	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1148380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1148381	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11564393	0.85[YRI][hapmap]
rs1220020	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1220021	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1220023	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1220026	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1220033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1220035	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs1236172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17468868	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs1785842	0.91[CHB][hapmap]
rs1785843	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9789221	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25687200-25699800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr18:25691400-25703400	Weak transcription	Fetal Brain Male	brain
3	chr18:25692200-25703200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr18:25692800-25699600	Weak transcription	Brain Substantia Nigra	brain
5	chr18:25692800-25700600	Enhancers	Fetal Heart	heart
6	chr18:25692800-25703600	Weak transcription	Ovary	ovary
7	chr18:25693200-25703600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr18:25695400-25708400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr18:25695600-25699600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr18:25695600-25699600	Weak transcription	Left Ventricle	heart
11	chr18:25695600-25699800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr18:25695600-25701600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr18:25695600-25703600	Weak transcription	Aorta	Aorta
14	chr18:25695600-25706800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr18:25696000-25701200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr18:25696000-25701200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr18:25696200-25701600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr18:25696200-25727800	Weak transcription	HSMMtube	muscle
19	chr18:25696400-25701600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr18:25696600-25715800	Weak transcription	HUVEC	blood vessel
21	chr18:25696800-25703400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr18:25696800-25703600	Weak transcription	HSMM	muscle
23	chr18:25697000-25705600	Weak transcription	NHLF	lung
24	chr18:25697000-25708200	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr18:25697400-25703600	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr18:25697600-25701600	Weak transcription	NH-A	brain
27	chr18:25697600-25703200	Weak transcription	Liver	Liver
28	chr18:25697800-25715600	Weak transcription	Dnd41	blood
29	chr18:25698200-25708000	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr18:25698600-25700000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr18:25699000-25699400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr18:25699000-25699600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr18:25699000-25700000	Enhancers	Brain Anterior Caudate	brain
34	chr18:25699000-25700000	Enhancers	Right Atrium	heart
35	chr18:25699000-25700400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
36	chr18:25699000-25701800	Enhancers	Osteobl	bone
37	chr18:25699200-25699800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr18:25699200-25700000	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr18:25699200-25700000	Enhancers	Right Ventricle	heart
40	chr18:25699200-25701200	Enhancers	Brain Angular Gyrus	brain
41	chr18:25699200-25701200	Weak transcription	Brain Germinal Matrix	brain
42	chr18:25699200-25701800	Enhancers	Muscle Satellite Cultured Cells	--

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