Variant report

Variant	rs1220021
Chromosome Location	chr18:25687118-25687119
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1148377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1148378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1148379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1148380	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1148381	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11564393	0.85[YRI][hapmap]
rs1220020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1220023	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1220026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1220033	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1220034	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1220035	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1236172	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17468868	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1785842	0.91[CHB][hapmap]
rs1785843	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9789221	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25655800-25690800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:25668200-25688000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr18:25670400-25687800	Weak transcription	Brain Germinal Matrix	brain
4	chr18:25670600-25690000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:25672000-25688000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr18:25673000-25688400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr18:25673600-25687400	Weak transcription	HepG2	liver
8	chr18:25675200-25688400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr18:25676200-25688400	Weak transcription	Osteobl	bone
10	chr18:25677200-25687200	Weak transcription	Fetal Brain Female	brain
11	chr18:25678800-25687600	Weak transcription	Liver	Liver
12	chr18:25679000-25688200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr18:25680400-25688400	Weak transcription	HSMM	muscle
14	chr18:25680600-25688000	Weak transcription	Left Ventricle	heart
15	chr18:25681400-25687400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr18:25682800-25687600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr18:25684200-25687600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr18:25685200-25687600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr18:25685200-25687800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr18:25685200-25688000	Weak transcription	Brain Hippocampus Middle	brain
21	chr18:25685600-25688400	Weak transcription	NH-A	brain
22	chr18:25686600-25687200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr18:25686800-25687600	Weak transcription	A549	lung
24	chr18:25687000-25687200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr18:25687000-25687400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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