Variant report

Variant	rs1785842
Chromosome Location	chr18:25708558-25708559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1148377	0.91[CHB][hapmap]
rs1148378	0.90[CHB][hapmap]
rs1148379	0.91[CHB][hapmap]
rs1148380	0.91[CHB][hapmap]
rs1148381	0.91[CHB][hapmap]
rs1219964	0.82[JPT][hapmap]
rs1220020	0.91[CHB][hapmap]
rs1220021	0.91[CHB][hapmap]
rs1220026	0.90[CHB][hapmap]
rs1220033	0.91[CHB][hapmap]
rs1220034	0.91[CHB][hapmap]
rs1220035	0.82[CEU][hapmap];0.90[CHB][hapmap];0.84[AMR][1000 genomes]
rs1236172	0.90[CHB][hapmap]
rs17468868	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25696200-25727800	Weak transcription	HSMMtube	muscle
2	chr18:25696600-25715800	Weak transcription	HUVEC	blood vessel
3	chr18:25697800-25715600	Weak transcription	Dnd41	blood
4	chr18:25702000-25712000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:25703800-25727600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr18:25703800-25730000	Weak transcription	Aorta	Aorta
7	chr18:25704800-25710200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr18:25705000-25709800	Weak transcription	Brain Substantia Nigra	brain
9	chr18:25705000-25727800	Weak transcription	Ovary	ovary
10	chr18:25705200-25710000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr18:25705200-25710000	Weak transcription	Brain Anterior Caudate	brain
12	chr18:25705200-25710000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr18:25705200-25710200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr18:25705200-25710200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr18:25705200-25727400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr18:25705600-25708800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr18:25705800-25711800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr18:25706600-25713000	Enhancers	Brain Germinal Matrix	brain
19	chr18:25706800-25713200	Enhancers	Fetal Heart	heart
20	chr18:25707000-25709800	Weak transcription	Fetal Brain Female	brain
21	chr18:25707000-25712200	Weak transcription	Fetal Brain Male	brain
22	chr18:25707200-25709800	Weak transcription	Right Atrium	heart
23	chr18:25707600-25708600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr18:25707600-25708800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr18:25707600-25709000	Flanking Active TSS	A549	lung
26	chr18:25707600-25709000	Enhancers	Osteobl	bone
27	chr18:25707800-25708800	Enhancers	Brain Angular Gyrus	brain
28	chr18:25707800-25709000	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr18:25707800-25710200	Enhancers	Liver	Liver
30	chr18:25708000-25708800	Flanking Active TSS	HepG2	liver
31	chr18:25708000-25708800	Enhancers	HSMM	muscle
32	chr18:25708000-25709000	Enhancers	Muscle Satellite Cultured Cells	--
33	chr18:25708000-25709200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr18:25708000-25709200	Enhancers	NH-A	brain
35	chr18:25708200-25708600	Enhancers	NHEK	skin
36	chr18:25708200-25710000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr18:25708200-25710600	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr18:25708400-25708600	Enhancers	Pancreas	Pancrea
39	chr18:25708400-25708600	Enhancers	NHLF	lung
40	chr18:25708400-25708800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
41	chr18:25708400-25708800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr18:25708400-25708800	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr18:25708400-25708800	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr18:25708400-25708800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr18:25708400-25708800	Enhancers	Left Ventricle	heart
46	chr18:25708400-25708800	Enhancers	Right Ventricle	heart
47	chr18:25708400-25709000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr18:25708400-25710600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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