Variant report

Variant	rs1148436
Chromosome Location	chr12:106582360-106582361
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:106574764..106576308-chr12:106581500..106583713,2	K562	blood:
2	chr12:106581102..106582992-chr12:106584022..106586384,2	MCF-7	breast:
3	chr12:106534451..106537070-chr12:106581248..106583700,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1148434	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1318909	0.90[EUR][1000 genomes]
rs1318910	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1427787	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1427789	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1427790	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1465546	0.85[ASN][1000 genomes]
rs2047546	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2059770	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2173595	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040534	chr12:106528394-106619175	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106574600-106587000	Weak transcription	Psoas Muscle	Psoas
2	chr12:106579400-106583200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr12:106580000-106585400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:106580600-106583600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr12:106580800-106583400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr12:106581000-106582400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:106581200-106582400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr12:106581200-106582400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr12:106581200-106583200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr12:106581200-106583200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr12:106581200-106583600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr12:106581400-106582600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr12:106581600-106583000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr12:106581800-106583000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr12:106581800-106583600	Enhancers	Adipose Nuclei	Adipose
16	chr12:106581800-106585800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr12:106582000-106582400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr12:106582000-106582400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr12:106582000-106582400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr12:106582000-106582400	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr12:106582000-106582400	Enhancers	Brain Germinal Matrix	brain
22	chr12:106582000-106582400	Bivalent Enhancer	Fetal Muscle Leg	muscle
23	chr12:106582000-106582400	Bivalent Enhancer	Placenta	Placenta
24	chr12:106582000-106582400	Bivalent Enhancer	Fetal Stomach	stomach
25	chr12:106582000-106582600	Flanking Active TSS	HepG2	liver
26	chr12:106582000-106583000	Enhancers	H1 Cell Line	embryonic stem cell
27	chr12:106582000-106583000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr12:106582000-106584600	Weak transcription	Fetal Kidney	kidney
29	chr12:106582200-106582400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr12:106582200-106582400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
31	chr12:106582200-106582600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
32	chr12:106582200-106582800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr12:106582200-106587000	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links