Variant report

Variant	rs2059770
Chromosome Location	chr12:106586314-106586315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11112902	1.00[JPT][hapmap]
rs11112903	1.00[JPT][hapmap]
rs1148434	0.86[EUR][1000 genomes]
rs1148436	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1318909	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1318910	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1427787	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1427789	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1427790	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2047546	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2062494	1.00[ASN][1000 genomes]
rs7959267	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040534	chr12:106528394-106619175	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106574600-106587000	Weak transcription	Psoas Muscle	Psoas
2	chr12:106582200-106587000	Weak transcription	Ovary	ovary
3	chr12:106583200-106588400	Weak transcription	HepG2	liver
4	chr12:106583600-106587000	Weak transcription	Adipose Nuclei	Adipose
5	chr12:106583600-106589600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr12:106585200-106589200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr12:106585200-106589200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr12:106585400-106587200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:106585400-106589400	Weak transcription	Fetal Kidney	kidney
10	chr12:106585800-106590600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr12:106586200-106589000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links