Variant report

Variant	rs1427787
Chromosome Location	chr12:106590567-106590568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1148434	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1148436	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1318909	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1318910	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1427789	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1427790	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1465546	0.85[ASN][1000 genomes]
rs2047546	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2059770	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2173595	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040534	chr12:106528394-106619175	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106585800-106590600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr12:106587000-106590800	Enhancers	Brain Hippocampus Middle	brain
3	chr12:106587200-106590800	Enhancers	Liver	Liver
4	chr12:106588400-106591200	Enhancers	HepG2	liver
5	chr12:106589800-106591000	Weak transcription	Lung	lung
6	chr12:106589800-106591200	Weak transcription	Ovary	ovary
7	chr12:106589800-106591400	Weak transcription	Right Atrium	heart
8	chr12:106589800-106591600	Weak transcription	Right Ventricle	heart
9	chr12:106589800-106592600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr12:106589800-106593400	Weak transcription	Psoas Muscle	Psoas
11	chr12:106590000-106591800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr12:106590000-106591800	Weak transcription	Fetal Heart	heart
13	chr12:106590000-106591800	Weak transcription	Fetal Lung	lung
14	chr12:106590000-106591800	Enhancers	NHDF-Ad	bronchial
15	chr12:106590000-106592800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr12:106590400-106591000	Weak transcription	Adipose Nuclei	Adipose
17	chr12:106590400-106591400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr12:106590400-106591800	Weak transcription	Fetal Brain Male	brain
19	chr12:106590400-106593800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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