Variant report

Variant	rs1318909
Chromosome Location	chr12:106592207-106592208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11112902	1.00[JPT][hapmap]
rs11112903	1.00[JPT][hapmap]
rs1148434	0.83[EUR][1000 genomes]
rs1148436	0.90[EUR][1000 genomes]
rs1318910	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1427787	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1427789	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1427790	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2047546	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2059770	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2062494	1.00[ASN][1000 genomes]
rs7959267	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040534	chr12:106528394-106619175	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106589800-106592600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:106589800-106593400	Weak transcription	Psoas Muscle	Psoas
3	chr12:106590000-106592800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr12:106590400-106593800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr12:106591000-106592400	Enhancers	Adipose Nuclei	Adipose
6	chr12:106591800-106592400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr12:106591800-106592400	Enhancers	Fetal Lung	lung
8	chr12:106592000-106594400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr12:106592000-106595400	Weak transcription	Liver	Liver
10	chr12:106592200-106592800	Enhancers	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links