Variant report

Variant	rs11487390
Chromosome Location	chr1:173651062-173651063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173648900..173651507-chr1:173681730..173683630,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10157215	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10157218	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10157371	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10157384	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10157684	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10158197	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10158568	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10399912	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10489892	1.00[EUR][1000 genomes]
rs10489893	1.00[EUR][1000 genomes]
rs10912668	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10912674	1.00[EUR][1000 genomes]
rs10912681	1.00[EUR][1000 genomes]
rs10912687	1.00[EUR][1000 genomes]
rs10912688	1.00[EUR][1000 genomes]
rs10912693	1.00[EUR][1000 genomes]
rs10912699	1.00[EUR][1000 genomes]
rs10912700	1.00[EUR][1000 genomes]
rs1135333	1.00[EUR][1000 genomes]
rs12057440	1.00[EUR][1000 genomes]
rs12060967	1.00[EUR][1000 genomes]
rs12078471	1.00[EUR][1000 genomes]
rs12079240	1.00[EUR][1000 genomes]
rs12079315	1.00[EUR][1000 genomes]
rs12081137	1.00[EUR][1000 genomes]
rs12083064	1.00[EUR][1000 genomes]
rs12084213	1.00[EUR][1000 genomes]
rs12086687	1.00[EUR][1000 genomes]
rs12090440	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12090507	1.00[EUR][1000 genomes]
rs12093624	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12094912	1.00[EUR][1000 genomes]
rs1322773	1.00[EUR][1000 genomes]
rs1570385	1.00[EUR][1000 genomes]
rs16846395	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16846398	1.00[EUR][1000 genomes]
rs1903410	1.00[EUR][1000 genomes]
rs1903411	1.00[EUR][1000 genomes]
rs2227611	1.00[EUR][1000 genomes]
rs2227622	1.00[EUR][1000 genomes]
rs28853918	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56195767	1.00[EUR][1000 genomes]
rs57586767	1.00[EUR][1000 genomes]
rs59090917	1.00[EUR][1000 genomes]
rs59332560	1.00[EUR][1000 genomes]
rs60047664	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6425256	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6684147	1.00[EUR][1000 genomes]
rs6690869	1.00[EUR][1000 genomes]
rs73033131	1.00[EUR][1000 genomes]
rs74126415	1.00[EUR][1000 genomes]
rs7556211	1.00[EUR][1000 genomes]
rs874342	1.00[EUR][1000 genomes]
rs9425413	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9425414	1.00[EUR][1000 genomes]
rs9425427	1.00[EUR][1000 genomes]
rs9425735	1.00[EUR][1000 genomes]
rs9425768	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012384	chr1:173614816-173974426	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	294 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173639000-173657200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:173645800-173654600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr1:173650000-173654600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:173650600-173652800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:173650800-173652400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr1:173651000-173651600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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