Variant report

Variant	rs60047664
Chromosome Location	chr1:173655836-173655837
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10157215	1.00[EUR][1000 genomes]
rs10157218	1.00[EUR][1000 genomes]
rs10157371	1.00[EUR][1000 genomes]
rs10157384	1.00[EUR][1000 genomes]
rs10157684	1.00[EUR][1000 genomes]
rs10158197	1.00[EUR][1000 genomes]
rs10158568	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10399912	1.00[EUR][1000 genomes]
rs10489892	1.00[EUR][1000 genomes]
rs10489893	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912668	1.00[EUR][1000 genomes]
rs10912674	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912681	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912687	1.00[EUR][1000 genomes]
rs10912688	1.00[EUR][1000 genomes]
rs10912693	1.00[EUR][1000 genomes]
rs10912699	1.00[EUR][1000 genomes]
rs10912700	1.00[EUR][1000 genomes]
rs10912701	1.00[EUR][1000 genomes]
rs1135333	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11487390	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12057440	1.00[EUR][1000 genomes]
rs12060967	1.00[EUR][1000 genomes]
rs12064818	1.00[EUR][1000 genomes]
rs12078471	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079240	1.00[EUR][1000 genomes]
rs12079315	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12081137	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12083064	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12084213	1.00[EUR][1000 genomes]
rs12086687	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12090440	1.00[EUR][1000 genomes]
rs12090507	1.00[EUR][1000 genomes]
rs12093624	1.00[EUR][1000 genomes]
rs12094912	1.00[EUR][1000 genomes]
rs1322773	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1570385	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16846395	1.00[EUR][1000 genomes]
rs16846398	1.00[EUR][1000 genomes]
rs1903410	1.00[EUR][1000 genomes]
rs1903411	1.00[EUR][1000 genomes]
rs2227611	1.00[EUR][1000 genomes]
rs2227622	1.00[EUR][1000 genomes]
rs28853918	1.00[EUR][1000 genomes]
rs56195767	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57586767	1.00[EUR][1000 genomes]
rs59090917	1.00[EUR][1000 genomes]
rs59332560	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6425256	1.00[EUR][1000 genomes]
rs6684147	1.00[EUR][1000 genomes]
rs6690869	1.00[EUR][1000 genomes]
rs73033131	1.00[EUR][1000 genomes]
rs74126415	1.00[EUR][1000 genomes]
rs7556211	1.00[EUR][1000 genomes]
rs874342	1.00[EUR][1000 genomes]
rs9425413	1.00[EUR][1000 genomes]
rs9425414	1.00[EUR][1000 genomes]
rs9425427	1.00[EUR][1000 genomes]
rs9425735	1.00[EUR][1000 genomes]
rs9425768	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012384	chr1:173614816-173974426	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	294 gene(s)	inside rSNPs	diseases
2	nsv1014827	chr1:173653453-173692470	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173639000-173657200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:173651800-173657400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:173652800-173656800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:173655000-173656600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr1:173655200-173656800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr1:173655600-173656800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr1:173655800-173657000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr1:173655800-173657200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:173655800-173657400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr1:173655800-173657400	Weak transcription	K562	blood

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