Variant report

Variant	rs10157371
Chromosome Location	chr1:173660786-173660787
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173659508..173662067-chr1:173673058..173675830,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10157215	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10157218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10157384	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10157684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10158197	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10158568	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10399912	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10489892	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10489893	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912668	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912674	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912681	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912683	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10912687	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912688	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912693	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912699	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912700	1.00[EUR][1000 genomes]
rs10912701	1.00[EUR][1000 genomes]
rs1135333	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11487390	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12057440	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12060967	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12064818	1.00[EUR][1000 genomes]
rs12078471	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079240	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079315	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12081137	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12083064	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12084213	1.00[EUR][1000 genomes]
rs12086687	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12090440	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12090507	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12093624	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12094912	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1322773	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1322781	1.00[EUR][1000 genomes]
rs1570385	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16846395	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16846398	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1903410	1.00[EUR][1000 genomes]
rs1903411	1.00[EUR][1000 genomes]
rs2227611	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2227622	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28853918	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4652225	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56195767	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57586767	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57820984	0.91[AMR][1000 genomes]
rs59090917	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59332560	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60047664	1.00[EUR][1000 genomes]
rs6425256	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6684147	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6690869	1.00[EUR][1000 genomes]
rs73033131	1.00[EUR][1000 genomes]
rs74126415	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7556211	1.00[EUR][1000 genomes]
rs874342	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9425413	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9425414	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9425427	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9425735	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9425768	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012384	chr1:173614816-173974426	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	294 gene(s)	inside rSNPs	diseases
2	nsv1014827	chr1:173653453-173692470	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173660400-173660800	Weak transcription	K562	blood

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