The 2.0 version of rSNPBase

Variant report

Variant rs12090440
Chromosome Location chr1:173705860-173705861
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:113 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173685000-173720800 Weak transcription Small Intestine intestine
2 chr1:173685200-173724600 Weak transcription Placenta Amnion Placenta Amnion
3 chr1:173685400-173725000 Weak transcription Skeletal Muscle Male skeletal muscle
4 chr1:173685800-173724800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr1:173686800-173721600 Weak transcription HUVEC blood vessel
6 chr1:173686800-173721800 Weak transcription Colon Smooth Muscle Colon
7 chr1:173686800-173725400 Weak transcription Right Ventricle heart
8 chr1:173687600-173706600 Weak transcription Primary T killer memory cells from peripheral blood blood
9 chr1:173687800-173707200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
10 chr1:173691200-173710000 Weak transcription Hela-S3 cervix
11 chr1:173694600-173706200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr1:173694600-173708000 Weak transcription Fetal Heart heart
13 chr1:173694600-173724800 Weak transcription HMEC breast
14 chr1:173694800-173718400 Weak transcription NHDF-Ad bronchial
15 chr1:173695000-173718000 Weak transcription A549 lung
16 chr1:173695400-173721600 Weak transcription Brain Cingulate Gyrus brain
17 chr1:173695400-173726000 Weak transcription H9 Cell Line embryonic stem cell
18 chr1:173695600-173721000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
19 chr1:173695800-173710000 Weak transcription Primary B cells from peripheral blood blood
20 chr1:173695800-173725000 Weak transcription Rectal Smooth Muscle rectum
21 chr1:173695800-173726000 Weak transcription Esophagus oesophagus
22 chr1:173695800-173729800 Weak transcription ES-I3 Cell Line embryonic stem cell
23 chr1:173696200-173726000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
24 chr1:173696600-173721000 Weak transcription Skeletal Muscle Female skeletal muscle
25 chr1:173696600-173723000 Weak transcription iPS-18 Cell Line embryonic stem cell
26 chr1:173698000-173724800 Weak transcription HUES6 Cell Line embryonic stem cell
27 chr1:173699600-173725800 Weak transcription Fetal Kidney kidney
28 chr1:173702400-173706800 Strong transcription Primary T cells from cord blood blood
29 chr1:173702600-173706200 Strong transcription Primary T helper cells PMA-I stimulated --
30 chr1:173702600-173706200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr1:173702800-173706000 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
32 chr1:173702800-173706200 Strong transcription Duodenum Smooth Muscle Duodenum
33 chr1:173703000-173707600 Strong transcription Fetal Lung lung
34 chr1:173703200-173706600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
35 chr1:173703400-173715000 Weak transcription Primary T helper naive cells from peripheral blood blood
36 chr1:173703400-173720800 Weak transcription Brain Inferior Temporal Lobe brain
37 chr1:173703400-173721400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr1:173703400-173725000 Weak transcription Colonic Mucosa Colon
39 chr1:173703400-173725000 Weak transcription Psoas Muscle Psoas
40 chr1:173703400-173726000 Weak transcription Aorta Aorta
41 chr1:173703400-173726000 Weak transcription Spleen Spleen
42 chr1:173703400-173726000 Weak transcription NHEK skin
43 chr1:173703600-173706000 Weak transcription HepG2 liver
44 chr1:173703600-173724400 Weak transcription Brain Substantia Nigra brain
45 chr1:173703600-173724400 Weak transcription GM12878-XiMat blood
46 chr1:173703600-173724400 Weak transcription HSMMtube muscle
47 chr1:173703600-173724800 Weak transcription Pancreas Pancrea
48 chr1:173703800-173710000 Weak transcription Primary neutrophils fromperipheralblood blood
49 chr1:173703800-173728200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
50 chr1:173704200-173706000 ZNF genes & repeats Fetal Stomach stomach

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Last update: Aug 31, 2015