Variant report

Variant	rs11489839
Chromosome Location	chr11:16560919-16560920
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10741702	0.84[EUR][1000 genomes]
rs10832623	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10832649	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11023973	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11023979	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11023982	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11023992	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11023993	0.82[EUR][1000 genomes]
rs11512060	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11529589	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12146438	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12362867	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12363505	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12364964	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12365482	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1354329	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4325274	0.84[EUR][1000 genomes]
rs4576784	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4593976	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55730604	0.86[EUR][1000 genomes]
rs56074687	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56311489	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67150549	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72859415	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72859445	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72875213	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72875217	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1035768	chr11:16530440-16578566	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16558800-16564000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:16558800-16565800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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