Variant report

Variant	rs4325274
Chromosome Location	chr11:16623906-16623907
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16077092..16078616-chr11:16622485..16624723,2	K562	blood:
2	chr11:16370053..16372809-chr11:16622529..16624402,2	K562	blood:
3	chr11:15962859..15964423-chr11:16623575..16625861,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10741702	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832618	1.00[CHB][hapmap]
rs10832649	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832655	1.00[ASN][1000 genomes]
rs10832657	1.00[ASN][1000 genomes]
rs11023973	0.86[ASN][1000 genomes]
rs11023979	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11023982	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11023992	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023993	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11024001	1.00[ASN][1000 genomes]
rs11024008	0.93[ASN][1000 genomes]
rs11024031	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11489839	0.84[EUR][1000 genomes]
rs11517759	0.85[ASN][1000 genomes]
rs11550903	0.85[ASN][1000 genomes]
rs12364964	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12365482	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12365658	0.85[ASN][1000 genomes]
rs1354329	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap]
rs1392997	0.82[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1392998	1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1501452	0.85[ASN][1000 genomes]
rs2134077	0.85[ASN][1000 genomes]
rs3809095	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4593976	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4757430	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs55941903	1.00[ASN][1000 genomes]
rs56074687	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56222320	1.00[ASN][1000 genomes]
rs56227058	0.85[ASN][1000 genomes]
rs6677	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs72859415	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72859445	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72862562	0.85[ASN][1000 genomes]
rs72875213	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72875217	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73419031	1.00[ASN][1000 genomes]
rs7481887	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16618200-16624800	Weak transcription	Right Atrium	heart
2	chr11:16621800-16624200	Weak transcription	Left Ventricle	heart
3	chr11:16621800-16624600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:16621800-16624800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:16622400-16624800	Weak transcription	Brain Germinal Matrix	brain
6	chr11:16623000-16624600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:16623200-16624800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:16623400-16624000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:16623800-16624200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr11:16623800-16624400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
11	chr11:16623800-16625200	Enhancers	Fetal Heart	heart
12	chr11:16623800-16625400	Enhancers	K562	blood

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