Variant report

Variant	rs4593976
Chromosome Location	chr11:16591594-16591595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10741702	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10832618	1.00[CHB][hapmap];0.85[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs10832623	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10832649	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10832655	0.93[ASN][1000 genomes]
rs10832657	0.93[ASN][1000 genomes]
rs11023973	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11023979	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11023982	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11023992	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11023993	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11024001	0.93[ASN][1000 genomes]
rs11024008	0.86[ASN][1000 genomes]
rs11024031	1.00[CHB][hapmap]
rs11489839	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11512060	0.81[EUR][1000 genomes]
rs11529589	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12146438	0.86[EUR][1000 genomes]
rs12362867	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12363505	0.86[EUR][1000 genomes]
rs12364964	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12365482	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1354329	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs1392997	0.82[CHB][hapmap];0.84[GIH][hapmap]
rs1392998	1.00[CHB][hapmap];0.83[CHD][hapmap];0.84[GIH][hapmap]
rs34632936	0.86[AFR][1000 genomes]
rs3809095	0.87[CEU][hapmap];0.83[CHD][hapmap];0.96[GIH][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap]
rs4325274	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4576784	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4757430	1.00[CHB][hapmap]
rs55730604	0.85[EUR][1000 genomes]
rs55941903	0.93[ASN][1000 genomes]
rs56074687	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56222320	0.93[ASN][1000 genomes]
rs56311489	0.86[EUR][1000 genomes]
rs6677	1.00[CHB][hapmap];0.83[CHD][hapmap];0.82[GIH][hapmap]
rs67150549	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72859415	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72859445	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72875213	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72875217	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73419031	0.93[ASN][1000 genomes]
rs7481887	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv983173	chr11:16581343-16600284	Weak transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16573000-16594600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:16583800-16594000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:16584400-16593000	Weak transcription	Psoas Muscle	Psoas
4	chr11:16584400-16605600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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