Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:16758032-16758419	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr11:16758046-16758496	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16627961..16630692-chr11:16757608..16759355,2	K562	blood:
2	chr11:16728614..16731419-chr11:16757073..16759306,2	K562	blood:

Variant related genes	Relation type
C11orf58	TF binding region
ENSG00000110693	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10741702	0.87[EUR][1000 genomes]
rs10832649	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11023992	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11023993	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11024031	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11517759	0.85[ASN][1000 genomes]
rs11550903	0.85[ASN][1000 genomes]
rs12364964	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12365482	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12365658	0.85[ASN][1000 genomes]
rs1392997	0.83[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1392998	1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1501452	0.85[ASN][1000 genomes]
rs2134077	0.85[ASN][1000 genomes]
rs4325274	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4757430	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs56074687	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56227058	0.85[ASN][1000 genomes]
rs6677	1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs72862562	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16748200-16759400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:16758200-16758400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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