Variant report

Variant	rs11023992
Chromosome Location	chr11:16617935-16617936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10741702	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832618	1.00[CHB][hapmap];0.81[GIH][hapmap]
rs10832649	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832655	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10832657	1.00[ASN][1000 genomes]
rs11023973	0.86[ASN][1000 genomes]
rs11023979	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11023982	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11023993	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11024001	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11024008	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11024031	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11489839	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11517759	0.85[ASN][1000 genomes]
rs11550903	0.85[ASN][1000 genomes]
rs12364964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12365482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12365658	0.85[ASN][1000 genomes]
rs1354329	0.83[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap]
rs1392997	0.82[CHB][hapmap];0.83[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1392998	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1501452	0.85[ASN][1000 genomes]
rs2134077	0.85[ASN][1000 genomes]
rs3809095	1.00[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4325274	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4593976	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4757430	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs55941903	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56074687	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56222320	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56227058	0.85[ASN][1000 genomes]
rs6677	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs72859415	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72859445	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72862562	0.85[ASN][1000 genomes]
rs72875213	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72875217	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73419031	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7481887	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16608000-16621600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr11:16610400-16623800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr11:16616000-16623400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:16617200-16618000	Enhancers	Fetal Heart	heart
5	chr11:16617200-16618200	Enhancers	Brain Germinal Matrix	brain
6	chr11:16617200-16618200	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr11:16617600-16618200	Enhancers	Fetal Lung	lung
8	chr11:16617600-16618600	Flanking Active TSS	K562	blood
9	chr11:16617800-16618200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:16617800-16618200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:16617800-16618200	Active TSS	Fetal Brain Male	brain
12	chr11:16617800-16618200	Enhancers	Right Atrium	heart
13	chr11:16617800-16618400	Enhancers	Cortex derived primary cultured neurospheres	brain

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