Variant report

Variant	rs11517759
Chromosome Location	chr11:16691383-16691384
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16691188..16692933-chr11:16759171..16761829,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110696	Chromatin interaction
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10741702	0.85[ASN][1000 genomes]
rs10832649	0.85[ASN][1000 genomes]
rs10832655	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10832657	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11023992	0.85[ASN][1000 genomes]
rs11024001	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11024008	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11024031	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11550903	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12361242	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12364964	0.82[ASN][1000 genomes]
rs12365482	0.82[ASN][1000 genomes]
rs12365658	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1392997	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1392998	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1501452	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2134077	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3809095	0.85[ASN][1000 genomes]
rs4325274	0.85[ASN][1000 genomes]
rs4757430	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55941903	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56074687	0.82[ASN][1000 genomes]
rs56222320	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56227058	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6677	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72862562	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419031	0.85[ASN][1000 genomes]
rs7481887	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832076	chr11:16650873-16691808	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3396970	chr11:16658425-16715569	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16690800-16691400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr11:16690800-16691400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:16690800-16691600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:16690800-16691600	Enhancers	HSMM	muscle
5	chr11:16690800-16691800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:16690800-16692000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr11:16690800-16692000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:16690800-16692000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:16690800-16692000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr11:16690800-16692000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:16690800-16692000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:16690800-16692000	Enhancers	HMEC	breast
13	chr11:16690800-16692000	Enhancers	NHEK	skin
14	chr11:16691000-16691400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr11:16691000-16691400	Enhancers	HSMMtube	muscle
16	chr11:16691000-16691400	Enhancers	NH-A	brain
17	chr11:16691000-16691800	Enhancers	H9 Cell Line	embryonic stem cell
18	chr11:16691000-16691800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:16691000-16691800	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr11:16691000-16691800	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr11:16691000-16691800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:16691000-16691800	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr11:16691000-16691800	Enhancers	A549	lung
24	chr11:16691000-16692000	Enhancers	H1 Cell Line	embryonic stem cell
25	chr11:16691000-16692000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:16691000-16692200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:16691200-16691600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
28	chr11:16691200-16691800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:16691200-16692000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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