Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10828347	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828356	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10828385	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10828386	1.00[ASN][1000 genomes]
rs11013181	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013200	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013211	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013254	1.00[ASN][1000 genomes]
rs11013267	1.00[ASN][1000 genomes]
rs11013268	1.00[ASN][1000 genomes]
rs11492540	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11511184	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592801	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11593763	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11597797	1.00[ASN][1000 genomes]
rs11598224	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598272	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598607	1.00[ASN][1000 genomes]
rs11599326	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12356890	1.00[ASN][1000 genomes]
rs12358422	1.00[ASN][1000 genomes]
rs7097036	1.00[ASN][1000 genomes]
rs7100326	1.00[ASN][1000 genomes]
rs72800652	1.00[ASN][1000 genomes]
rs73600522	1.00[ASN][1000 genomes]
rs9730948	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23169600-23170200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:23169600-23170200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:23169800-23170200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr10:23170000-23174600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:23170000-23174600	Weak transcription	Pancreas	Pancrea

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