Variant report

Variant	rs11597797
Chromosome Location	chr10:23082328-23082329
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23077180..23079268-chr10:23081726..23083280,2	MCF-7	breast:
2	chr10:23080355..23083056-chr10:23096446..23098590,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10828347	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10828356	0.82[CEU][hapmap];0.83[AFR][1000 genomes]
rs10828385	0.82[CEU][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10828386	1.00[ASN][1000 genomes]
rs11013181	1.00[ASN][1000 genomes]
rs11013200	1.00[ASN][1000 genomes]
rs11013211	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11013213	0.82[CEU][hapmap]
rs11492540	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11492541	1.00[ASN][1000 genomes]
rs11511182	0.82[CEU][hapmap]
rs11511184	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11592137	0.88[EUR][1000 genomes]
rs11592801	1.00[ASN][1000 genomes]
rs11593763	0.82[CEU][hapmap];1.00[ASN][1000 genomes]
rs11598224	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11598272	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11598607	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598621	0.82[CEU][hapmap]
rs11599326	1.00[ASN][1000 genomes]
rs12358422	1.00[ASN][1000 genomes]
rs17438150	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7100326	1.00[ASN][1000 genomes]
rs73600522	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9730948	0.82[CEU][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550212	chr10:23030282-23086690	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv894960	chr10:23049139-23113841	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv466833	chr10:23050683-23110797	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv894962	chr10:23050683-23113841	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv894963	chr10:23050683-23121820	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv894964	chr10:23050683-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv894965	chr10:23071128-23113841	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23081200-23092000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:23081200-23093000	Weak transcription	Brain Hippocampus Middle	brain

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