Variant report
| Variant | rs10828356 |
|---|---|
| Chromosome Location | chr10:23158011-23158012 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:23157148..23158987-chr10:23383169..23385057,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000148450 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10466083 | 1.00[CEU][hapmap] |
| rs10828347 | 0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs10828385 | 1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs10828386 | 1.00[CEU][hapmap] |
| rs11013181 | 0.85[EUR][1000 genomes] |
| rs11013200 | 1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11013202 | 1.00[CEU][hapmap] |
| rs11013203 | 1.00[CEU][hapmap] |
| rs11013211 | 0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs11013213 | 1.00[CEU][hapmap] |
| rs11492540 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11492541 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs11511182 | 1.00[CEU][hapmap] |
| rs11511184 | 1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11592801 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs11593763 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs11597797 | 0.83[AFR][1000 genomes] |
| rs11598224 | 0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs11598272 | 0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs11598621 | 1.00[CEU][hapmap] |
| rs11599326 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12358422 | 0.81[EUR][1000 genomes] |
| rs17538592 | 0.87[CEU][hapmap] |
| rs7097036 | 0.87[CEU][hapmap] |
| rs7100326 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs9730948 | 1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2764013 | chr10:23087298-23239345 | Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv894966 | chr10:23090535-23202522 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
