Variant report
| Variant | rs17538592 |
|---|---|
| Chromosome Location | chr10:23298918-23298919 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:23297640..23300318-chr10:23342742..23344697,2 | K562 | blood: | |
| 2 | chr10:23297640..23302791-chr10:23338306..23344811,10 | K562 | blood: | |
| 3 | chr10:23298223..23301629-chr10:23333237..23336765,3 | K562 | blood: | |
| 4 | chr10:23297348..23299229-chr10:23338306..23340971,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10828347 | 1.00[ASN][1000 genomes] |
| rs10828356 | 0.87[CEU][hapmap] |
| rs10828385 | 0.87[CEU][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10828386 | 0.85[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs11013181 | 1.00[ASN][1000 genomes] |
| rs11013200 | 0.85[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs11013202 | 1.00[CEU][hapmap] |
| rs11013203 | 0.85[CEU][hapmap] |
| rs11013211 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11013213 | 0.87[CEU][hapmap] |
| rs11013254 | 1.00[ASN][1000 genomes] |
| rs11013267 | 1.00[ASN][1000 genomes] |
| rs11013268 | 1.00[ASN][1000 genomes] |
| rs11492540 | 1.00[ASN][1000 genomes] |
| rs11492541 | 1.00[ASN][1000 genomes] |
| rs11511182 | 0.86[CEU][hapmap] |
| rs11511184 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11592801 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11593034 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes] |
| rs11593763 | 0.87[CEU][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11598224 | 1.00[ASN][1000 genomes] |
| rs11598272 | 1.00[ASN][1000 genomes] |
| rs11598621 | 0.87[CEU][hapmap] |
| rs11599326 | 1.00[ASN][1000 genomes] |
| rs12356890 | 1.00[ASN][1000 genomes] |
| rs12358422 | 0.88[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7097036 | 1.00[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs7100326 | 0.85[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs72800652 | 1.00[ASN][1000 genomes] |
| rs9730948 | 0.87[CEU][hapmap];1.00[ASN][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
