Variant report

Variant	rs1149578
Chromosome Location	chr11:76546971-76546972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76546670..76552147-chr11:76556220..76560576,6	K562	blood:
2	chr11:76546720..76547429-chr11:76631285..76632052,2	K562	blood:
3	chr11:76545387..76548073-chr11:76553692..76555728,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10899290	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899291	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1149576	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1149579	0.86[CHB][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1149580	1.00[CHB][hapmap];0.99[ASN][1000 genomes]
rs1224950	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1225130	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1225138	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1225145	0.99[ASN][1000 genomes]
rs1225146	0.99[ASN][1000 genomes]
rs1225148	0.99[ASN][1000 genomes]
rs12270437	0.96[ASN][1000 genomes]
rs12785471	0.96[ASN][1000 genomes]
rs12793753	0.96[ASN][1000 genomes]
rs1664085	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2372385	0.96[ASN][1000 genomes]
rs4944123	0.96[ASN][1000 genomes]
rs72941813	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7930010	0.96[ASN][1000 genomes]
rs7931306	0.96[ASN][1000 genomes]
rs7938899	0.96[ASN][1000 genomes]
rs894066	0.97[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76535400-76549000	Weak transcription	Small Intestine	intestine
2	chr11:76536800-76547800	Weak transcription	Left Ventricle	heart
3	chr11:76537200-76547200	Weak transcription	Spleen	Spleen
4	chr11:76537400-76547000	Weak transcription	Hela-S3	cervix
5	chr11:76542000-76547200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:76542000-76547200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr11:76542200-76547800	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:76542400-76547000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:76542400-76547000	Weak transcription	Pancreas	Pancrea
10	chr11:76542400-76547200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:76542400-76547200	Weak transcription	Colonic Mucosa	Colon
12	chr11:76542400-76547200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr11:76542400-76547400	Weak transcription	NHEK	skin
14	chr11:76542400-76547600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:76542400-76547600	Weak transcription	Fetal Lung	lung
16	chr11:76542400-76547600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr11:76542400-76548800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr11:76542600-76547200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:76544000-76547200	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr11:76544600-76548800	Enhancers	Fetal Stomach	stomach
21	chr11:76544800-76547200	Weak transcription	Esophagus	oesophagus
22	chr11:76545000-76551200	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr11:76545200-76547000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr11:76545200-76547200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:76545200-76547800	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr11:76545200-76548000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:76545200-76548200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr11:76545400-76547200	Weak transcription	Fetal Muscle Leg	muscle
29	chr11:76545400-76547400	Weak transcription	Colon Smooth Muscle	Colon
30	chr11:76545800-76548600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:76546000-76547000	Weak transcription	Placenta	Placenta
32	chr11:76546000-76547000	Weak transcription	Lung	lung
33	chr11:76546000-76550600	Enhancers	Adipose Nuclei	Adipose
34	chr11:76546400-76551200	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr11:76546800-76547200	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr11:76546800-76548800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:76546800-76551600	Enhancers	K562	blood

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