Variant report

Variant	rs1225148
Chromosome Location	chr11:76556155-76556156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10899290	0.97[ASN][1000 genomes]
rs10899291	0.97[ASN][1000 genomes]
rs1149576	0.84[ASN][1000 genomes]
rs1149578	1.00[CHB][hapmap];0.99[ASN][1000 genomes]
rs1149579	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1149580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1224950	0.90[ASN][1000 genomes]
rs1225130	1.00[ASN][1000 genomes]
rs1225138	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[ASN][1000 genomes]
rs1225145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1225146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270437	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12785471	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12793753	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2372385	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4944123	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72941813	0.97[ASN][1000 genomes]
rs7930010	0.98[AFR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7931306	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7938899	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs894066	0.98[AFR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1225148	CAPN5	cis	parietal	SCAN
rs1225148	GDPD5	cis	parietal	SCAN
rs1225148	RPS3	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76549600-76561000	Weak transcription	Right Atrium	heart
2	chr11:76549600-76570800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:76549800-76572000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:76550600-76566400	Weak transcription	Lung	lung
5	chr11:76551600-76558400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:76553400-76560400	Weak transcription	K562	blood
7	chr11:76555200-76556400	Enhancers	Liver	Liver
8	chr11:76555200-76556800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr11:76555600-76556200	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr11:76555600-76556400	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr11:76556000-76557400	Weak transcription	Rectal Mucosa Donor 31	rectum

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