Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76551458..76554014-chr11:76570616..76573436,2	MCF-7	breast:
2	chr11:76551001..76553533-chr11:76566118..76568951,2	K562	blood:

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10899290	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899291	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1149576	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1149578	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1149579	0.86[CHB][hapmap];0.99[ASN][1000 genomes]
rs1149580	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[ASN][1000 genomes]
rs12223477	0.82[GIH][hapmap]
rs1224950	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1225130	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1225145	1.00[ASN][1000 genomes]
rs1225146	1.00[ASN][1000 genomes]
rs1225148	1.00[ASN][1000 genomes]
rs12270437	0.97[ASN][1000 genomes]
rs12785471	0.97[ASN][1000 genomes]
rs12793753	0.97[ASN][1000 genomes]
rs1664085	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1945085	0.80[GIH][hapmap]
rs2187499	0.80[GIH][hapmap]
rs2279518	0.82[GIH][hapmap]
rs2372385	0.97[ASN][1000 genomes]
rs4944123	0.97[ASN][1000 genomes]
rs72941813	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7930010	0.97[ASN][1000 genomes]
rs7931306	0.97[ASN][1000 genomes]
rs7938899	0.97[ASN][1000 genomes]
rs894066	0.99[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1225138	GDPD5	cis	parietal	SCAN
rs1225138	CAPN5	cis	parietal	SCAN
rs1225138	ALG8	cis	parietal	SCAN
rs1225138	ACER3	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76549600-76561000	Weak transcription	Right Atrium	heart
2	chr11:76549600-76570800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:76549800-76572000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:76550600-76566400	Weak transcription	Lung	lung
5	chr11:76551200-76555400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr11:76551600-76555200	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr11:76551600-76558400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:76551800-76555600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr11:76552400-76553800	Enhancers	Liver	Liver
10	chr11:76553000-76553800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:76553200-76553800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:76553400-76560400	Weak transcription	K562	blood

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